Type: Package
Package: PICtR
Title: Physically Interacting Cell (PIC) toolkit for R
Version: 1.0.2
Date: 2025-01-16
Authors@R: c(
    person("Lea", "Jopp-Saile", , "jopp-saile@protonmail.com", role = "aut",
           comment = c(ORCID = "0000-0002-7032-3003")),
    person("Viktoria", "Flore", , "viktoria.flore@bih-charite.de", role = c("aut", "cre"),
           comment = c(ORCID = "0009-0001-3023-433X"))
  )
Description: This is the computational workflow to analyse physically
        interacting cells (PICs) in flow cytometry data using R.
License: file LICENSE
URL: https://agshaas.github.io/PICtR/
BugReports: https://github.com/agSHaas/PICtR/issues
Depends: dplyr (>= 1.1.4), ggplot2 (>= 3.5.0), R (>= 4.3), Seurat (>=
        5.0.1)
Imports: BPCells (>= 0.1.0), cowplot, data.table, ggrepel, khroma (>=
        1.12.0), MASS, pals (>= 1.8), pbapply, readr (>= 2.1.5),
        scales, SeuratObject (>= 5.0.1), tibble, tidyr (>= 1.3.1)
Suggests: autothresholdr (>= 1.4.2), ComplexHeatmap (>= 2.16.0),
        cytoMEM (>= 1.4.0), dbscan, flowMeans, ggrastr, knitr,
        rmarkdown, Spectre (>= 1.1.0), testthat
VignetteBuilder: knitr
Remotes: github::bnprks/BPCells/r, github::immunedynamics/Spectre
Config/testthat/edition: 3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev python3 libx11-dev zlib1g-dev
Repository: https://agshaas.r-universe.dev
Date/Publication: 2026-05-18 14:34:21 UTC
RemoteUrl: https://github.com/agSHaas/PICtR
RemoteRef: HEAD
RemoteSha: b2b88db127990f8ca970f742ead4123dd089142b
NeedsCompilation: no
Packaged: 2026-10-15 09:18:02 UTC; root
Author: Lea Jopp-Saile [aut] (ORCID: <https://orcid.org/0000-0002-7032-3003>),
  Viktoria Flore [aut, cre] (ORCID:
    <https://orcid.org/0009-0001-3023-433X>)
Maintainer: Viktoria Flore <viktoria.flore@bih-charite.de>