NEWS

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Spectre 1.3.0

• Added utils.R to keep internal reusable functions.
• Refactored run.flowsom:
  • Added verbose parameter to optionally print progress messages.
  • Overwrites clust.name and meta.clust.name columns in input data.table if they already exist.
  • Tidied up and simplified code.
• Updated run.umap to overwrite umap.x.name and umap.y.name columns in input data.table if they already exist.
• Updated do.asinh:
  • Overwrite columns in input data.table if they already exist.
  • Added support to specify a list of cofactors, so different values can be assigned to different markers.
• Refactored make.colour.plot:
  • Move some code out to internal functions for modularity.
  • Rewrote and simplified code.
  • Added more colour scheme options to support all options in viridis and RColorBrewer and jet.
  • Updated documentation.
  • Fixed issue #197 by using geom_label_repel to draw centroid labels.
  • Added option to do fast plot using scattermore.
• Added deprecated message for fast.colour.plot.
• Fixed package.check for issue #186.
• Refactored read.files and remove any setwd() for issue #162.
• Add add.label to multi.plot for issue #202.
• Added a NEWS.md file to track changes to the package.
• Added testthat unittests.